dandelion.base.plotting.productive_ratio

dandelion.base.plotting.productive_ratio(adata, figsize=(8, 4), palette=['lightblue', 'darkblue'], fontsize=8, rotation=90, legend_kwargs={'bbox_to_anchor': (1, 0.5), 'frameon': False, 'loc': 'center left'})

Plot productive/non-productive contig ratio from AnnData (cell level).

Parameters:

• adata (AnnData) – AnnData object with .uns[‘productive_ratio’] computed from tl.productive_ratio.

• figsize (tuple[float, float], optional) – Size of figure.

• palette (list[str], optional) – List of colours to plot non-productive and productive respectively.

• fontsize (int | float, optional) – Font size of x and y tick labels.

• rotation (int | float, optional) – Rotation of x tick labels.

• legend_kwargs (dict, optional) – Any additional kwargs to plt.legend