dandelion.base.plotting.clone_network

dandelion.base.plotting.clone_network(adata, basis='vdj', edges=True, **kwargs)

Using scanpy’s plotting module to plot the network.

Only thing that is changed is the default options: basis = ‘vdj’ and edges = True.

Parameters:

• adata (AnnData | MuData) – AnnData or scirpy-formatted MuData object.

• basis (str, optional) – key for embedding.

• edges (bool, optional) – whether or not to plot edges.

• **kwargs – passed sc.pl.embedding.

Return type:

None