dandelion.base.core.Dandelion.write_10x

Dandelion.write_10x(folder='dandelion_data', filename_prefix='all', sequence_key='sequence', clone_key='clone_id')[source]

Alias for write_vdj() kept for backwards compatibility.

Parameters:

  • folder (Path | str, optional) – path to save the output files.

  • filename_prefix (str, optional) – prefix for the output files.

  • sequence_key (str, optional) – column name in .data slot to retrieve and write out in fasta format.

  • clone_key (str, optional) – column name in .data slot for clone id information.

Return type:

None