Overview
Installation
Basic requirements
Acknowledgements
Support
Citation
References

Tutorial:

Singularity preprocessing
Loading data for analysis
V(D)J analysis
Singularity changeo clonotype calling
V(D)J pseudobulk feature space

Advanced Guide (Base):

Pre-processing (Re-annotation)
Reading 10X Cell Ranger output directly
Interoperability with scirpy
Filtering
V(D)J clustering
Visualizing V(D)J data
Calculating diversity and mutation
Analyzing TCR data
V(D)J Trajectory
Dandelion class

Advanced Guide (Polars):

Pre-processing (Re-annotation)
Reading 10X Cell Ranger output directly
Interoperability with scirpy
Filtering
V(D)J clustering
Visualizing V(D)J data
Calculating diversity and mutation
Analyzing TCR data
V(D)J Trajectory
DandelionPolars class

API:

Base Backend: dandelion.base
Polars Backend: dandelion.polars
Utilities
Tutorial
Set Backend
Logging
External

dandelion

Base Backend: dandelion.base
dandelion.base.core.Dandelion.compute
View page source

dandelion.base.core.Dandelion.compute

Dandelion.compute()[source]: Convert self.distances to a concrete csr matrix.

Previous Next

© Copyright 2020, zktuong.

Built with Sphinx using a theme provided by Read the Docs.