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Overview
Installation
Basic requirements
Acknowledgements
Support
Citation
References
Tutorial:
Singularity preprocessing
Loading data for analysis
V(D)J analysis
Singularity changeo clonotype calling
V(D)J pseudobulk feature space
Advanced Guide:
Pre-processing (Re-annotation)
Reading 10X Cell Ranger output directly
Interoperability with
scirpy
Filtering
V(D)J clustering
Visualizing V(D)J data
Calculating diversity and mutation
Analyzing TCR data
V(D)J Trajectory
Dandelion class
Running from R
API:
Preprocessing:
pp
Preprocessing (external):
pp.external
Tools:
tl
Plotting:
pl
Utilities:
utl
Dandelion
Logging
dandelion
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