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  • Overview
  • Installation
  • Basic requirements
  • Acknowledgements
  • Support
  • Citation
  • References

Tutorial:

  • Singularity preprocessing
  • Loading data for analysis
  • V(D)J analysis
  • Singularity changeo clonotype calling
  • V(D)J pseudobulk feature space

Advanced Guide (Base):

  • Pre-processing (Re-annotation)
  • Reading 10X Cell Ranger output directly
  • Interoperability with scirpy
  • Filtering
  • V(D)J clustering
  • Visualizing V(D)J data
  • Calculating diversity and mutation
  • Analyzing TCR data
  • V(D)J Trajectory
  • Dandelion class

Advanced Guide (Polars):

  • Pre-processing (Re-annotation)
  • Reading 10X Cell Ranger output directly
  • Interoperability with scirpy
  • Filtering
  • V(D)J clustering
  • Visualizing V(D)J data
  • Calculating diversity and mutation
  • Analyzing TCR data
  • V(D)J Trajectory
  • DandelionPolars class

API:

  • Base Backend: dandelion.base
  • Polars Backend: dandelion.polars
  • Utilities
  • Tutorial
  • Set Backend
  • Logging
  • External
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