dandelion.external.immcantation.polars.changeo.assigngenes_igblast

dandelion.external.immcantation.polars.changeo.assigngenes_igblast(fasta, igblast_db=None, org='human', loci='ig', additional_args=[])

Reannotate with IgBLASTn.

Parameters:

• fasta (Path | str) – path to fasta file for reannotation.

• igblast_db (Path | str | None, optional) – path to igblast database.

• org (Literal[“human”, “mouse”], optional) – organism for germline sequences.

• loci (Literal[“ig”, “tr”], optional) – ig or tr mode for running igblastn.

• additional_args (list[str], optional) – Additional arguments to pass to AssignGenes.py.