dandelion.tools.chatterjee_corr

dandelion.tools.chatterjee_corr(adata, genes, pseudotime_col)

Function to compute chatterjee correlation of gene expression with pseudotime.

Parameters:

• adata (AnnData) – cell adata

• genes (list[str]) – List of genes selected to compute the correlation

• pseudotime_col (str) – column in adata.obs where pseudotime is stored

Returns:

a data frame with genes as rows, with cor_res (correlation statistics), pval (p-value), adj_pval (p-value adjusted by BH method) as columns.

Return type:

pd.DataFrame