dandelion.tools.pseudotime_transfer

dandelion.tools.pseudotime_transfer(adata, pr_res, suffix='')[source]

Function to add pseudotime and branch probabilities into adata.obs in place.

Parameters:

  • adata (AnnData) – adata for which pseudotime to be transferred to

  • pr_res (palantir.presults.PResults) – palantir pseudotime inference output object

  • suffix (str, optional) – suffix to be added after the added column names, default “” (none)

Returns:

transferred AnnData.

Return type:

AnnData