.. include:: README.rst

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   README.rst

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   :caption: Tutorial:

   notebooks/Q1-singularity-preprocessing.ipynb
   notebooks/Q2-object-prep.ipynb
   notebooks/Q3-analysis.ipynb
   notebooks/Q4-singularity-changeo.ipynb
   notebooks/Q5-pseudobulk.ipynb

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   :caption: Advanced Guide:

   notebooks/1_dandelion_preprocessing-10x_data.ipynb
   notebooks/1b_dandelion_noreannotation-10x_data.ipynb
   notebooks/1c_dandelion_scirpy.ipynb
   notebooks/2_dandelion_filtering-10x_data.ipynb
   notebooks/3_dandelion_findingclones-10x_data.ipynb
   notebooks/4_dandelion_visualization-10x_data.ipynb
   notebooks/5_dandelion_diversity_and_mutation-10x_data.ipynb
   notebooks/7_dandelion_TCR_data_10x_data.ipynb
   notebooks/8-pseudobulk-trajectory.ipynb
   notebooks/0_dandelion_primer.ipynb

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   :caption: API:
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   api