{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Dandelion class\n", "\n", "Much of the functions and utility of the `dandelion` package revolves around the `Dandelion` class object. The class will act as an intermediary object for storage and flexible interaction with other tools. This section will run through a quick primer to the `Dandelion` class." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Import modules" ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "scrolled": true }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "dandelion==1.0.0a1.dev36 pandas==2.3.3 numpy==2.3.5 matplotlib==3.10.6 networkx==3.6.1 scipy==1.15.2\n" ] } ], "source": [ "import os\n", "\n", "os.chdir(\"dandelion_tutorial/\")\n", "import dandelion as ddl\n", "\n", "ddl.set_backend(\"base\")\n", "\n", "ddl.logging.print_versions()" ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "scrolled": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "Finding clones based on B cell VDJ chains using junction_aa: 100%|██████████| 228/228 [00:00<00:00, 3802.21it/s]\n", "Finding clones based on B cell VJ chains using junction_aa: 100%|██████████| 213/213 [00:00<00:00, 4478.26it/s]\n", "Refining clone assignment based on VJ chain pairing : 100%|██████████| 2493/2493 [00:00<00:00, 333420.49it/s]\n" ] }, { "data": { "text/plain": [ "Dandelion class object with n_obs = 2493 and n_contigs = 7355\n", " data: 'sequence_id', 'sequence', 'rev_comp', 'productive', 'v_call', 'd_call', 'j_call', 'sequence_alignment', 'germline_alignment', 'junction', 'junction_aa', 'v_cigar', 'd_cigar', 'j_cigar', 'stop_codon', 'vj_in_frame', 'locus', 'c_call', 'junction_length', 'np1_length', 'np2_length', 'v_sequence_start', 'v_sequence_end', 'v_germline_start', 'v_germline_end', 'd_sequence_start', 'd_sequence_end', 'd_germline_start', 'd_germline_end', 'j_sequence_start', 'j_sequence_end', 'j_germline_start', 'j_germline_end', 'v_score', 'v_identity', 'v_support', 'd_score', 'd_identity', 'd_support', 'j_score', 'j_identity', 'j_support', 'fwr1', 'fwr2', 'fwr3', 'fwr4', 'cdr1', 'cdr2', 'cdr3', 'cell_id', 'consensus_count', 'umi_count', 'v_call_10x', 'd_call_10x', 'j_call_10x', 'junction_10x', 'junction_10x_aa', 'j_support_igblastn', 'j_score_igblastn', 'j_call_igblastn', 'j_call_blastn', 'j_identity_blastn', 'j_alignment_length_blastn', 'j_number_of_mismatches_blastn', 'j_number_of_gap_openings_blastn', 'j_sequence_start_blastn', 'j_sequence_end_blastn', 'j_germline_start_blastn', 'j_germline_end_blastn', 'j_support_blastn', 'j_score_blastn', 'j_sequence_alignment_blastn', 'j_germline_alignment_blastn', 'j_source', 'd_support_igblastn', 'd_score_igblastn', 'd_call_igblastn', 'd_call_blastn', 'd_identity_blastn', 'd_alignment_length_blastn', 'd_number_of_mismatches_blastn', 'd_number_of_gap_openings_blastn', 'd_sequence_start_blastn', 'd_sequence_end_blastn', 'd_germline_start_blastn', 'd_germline_end_blastn', 'd_support_blastn', 'd_score_blastn', 'd_sequence_alignment_blastn', 'd_germline_alignment_blastn', 'd_source', 'v_call_genotyped', 'germline_alignment_d_mask', 'sample_id', 'c_sequence_alignment', 'c_germline_alignment', 'c_sequence_start', 'c_sequence_end', 'c_score', 'c_identity', 'c_call_10x', 'junction_aa_length', 'fwr1_aa', 'fwr2_aa', 'fwr3_aa', 'fwr4_aa', 'cdr1_aa', 'cdr2_aa', 'cdr3_aa', 'sequence_alignment_aa', 'v_sequence_alignment_aa', 'd_sequence_alignment_aa', 'j_sequence_alignment_aa', 'complete_vdj', 'j_call_multimappers', 'j_call_multiplicity', 'j_call_sequence_start_multimappers', 'j_call_sequence_end_multimappers', 'j_call_support_multimappers', 'mu_count', 'ambiguous', 'extra', 'rearrangement_status', 'clone_id'\n", " metadata: 'clone_id', 'clone_id_rank', 'sample_id', 'locus_VDJ', 'locus_VJ', 'productive_VDJ', 'productive_VJ', 'v_call_VDJ', 'd_call_VDJ', 'j_call_VDJ', 'v_call_VJ', 'j_call_VJ', 'c_call_VDJ', 'c_call_VJ', 'junction_VDJ', 'junction_VJ', 'junction_aa_VDJ', 'junction_aa_VJ', 'v_call_B_VDJ', 'd_call_B_VDJ', 'j_call_B_VDJ', 'v_call_B_VJ', 'j_call_B_VJ', 'c_call_B_VDJ', 'c_call_B_VJ', 'productive_B_VDJ', 'productive_B_VJ', 'umi_count_B_VDJ', 'umi_count_B_VJ', 'v_call_VDJ_main', 'v_call_VJ_main', 'd_call_VDJ_main', 'j_call_VDJ_main', 'j_call_VJ_main', 'c_call_VDJ_main', 'c_call_VJ_main', 'v_call_B_VDJ_main', 'd_call_B_VDJ_main', 'j_call_B_VDJ_main', 'v_call_B_VJ_main', 'j_call_B_VJ_main', 'isotype', 'isotype_status', 'locus_status', 'chain_status', 'rearrangement_status_VDJ', 'rearrangement_status_VJ'" ] }, "execution_count": 2, "metadata": {}, "output_type": "execute_result" } ], "source": [ "vdj = ddl.read_h5ddl(\"dandelion_results.h5ddl\")\n", "# let's run find_clones again as this was not stored.\n", "ddl.tl.find_clones(vdj)\n", "vdj" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Essentially, the `.data` slot holds the AIRR contig table while the `.metadata` holds a collapsed version that is compatible with combining with `AnnData`'s `.obs` slot. You can retrieve these slots like a typical class object; for example, if I want the metadata:" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "object", "type": "string" }, { "name": "clone_id", "rawType": "object", "type": "string" }, { "name": "clone_id_rank", "rawType": "category", "type": "unknown" }, { "name": "sample_id", "rawType": "object", "type": "string" }, { "name": "locus_VDJ", "rawType": "object", "type": "unknown" }, { "name": "locus_VJ", "rawType": "object", "type": "unknown" }, { "name": "productive_VDJ", "rawType": "object", "type": "unknown" }, { "name": "productive_VJ", "rawType": "object", "type": "unknown" }, { "name": "v_call_VDJ", "rawType": "object", "type": "unknown" }, { "name": "d_call_VDJ", "rawType": "object", "type": "unknown" }, { "name": "j_call_VDJ", "rawType": "object", "type": "unknown" }, { "name": "v_call_VJ", "rawType": "object", "type": "unknown" }, { "name": "j_call_VJ", "rawType": "object", "type": "unknown" }, { "name": "c_call_VDJ", "rawType": "object", "type": "unknown" }, { "name": "c_call_VJ", "rawType": "object", "type": "unknown" }, { "name": "junction_VDJ", "rawType": "object", "type": "unknown" }, { "name": "junction_VJ", "rawType": "object", "type": "unknown" }, { "name": "junction_aa_VDJ", "rawType": "object", "type": "unknown" }, { "name": "junction_aa_VJ", "rawType": "object", "type": "unknown" }, { "name": "v_call_B_VDJ", "rawType": "object", "type": "unknown" }, { "name": "d_call_B_VDJ", "rawType": "object", "type": "unknown" }, { "name": "j_call_B_VDJ", "rawType": "object", "type": "unknown" }, { "name": "v_call_B_VJ", "rawType": "object", "type": "unknown" }, { "name": "j_call_B_VJ", "rawType": "object", "type": "unknown" }, { "name": "c_call_B_VDJ", "rawType": "object", "type": "unknown" }, { "name": "c_call_B_VJ", "rawType": "object", "type": "unknown" }, { "name": "productive_B_VDJ", "rawType": "object", "type": "unknown" }, { "name": "productive_B_VJ", "rawType": "object", "type": "unknown" }, { "name": "umi_count_B_VDJ", "rawType": "float64", "type": "float" }, { "name": "umi_count_B_VJ", "rawType": "float64", "type": "float" }, { "name": "v_call_VDJ_main", "rawType": "object", "type": "string" }, { "name": "v_call_VJ_main", "rawType": "object", "type": "string" }, { "name": "d_call_VDJ_main", "rawType": "object", "type": "string" }, { "name": "j_call_VDJ_main", "rawType": "object", "type": "string" }, { "name": "j_call_VJ_main", "rawType": "object", "type": "string" }, { "name": "c_call_VDJ_main", "rawType": "object", "type": "string" }, { "name": "c_call_VJ_main", "rawType": "object", "type": "string" }, { "name": "v_call_B_VDJ_main", "rawType": "object", "type": "string" }, { "name": "d_call_B_VDJ_main", "rawType": "object", "type": "string" }, { "name": "j_call_B_VDJ_main", "rawType": "object", "type": "string" }, { "name": "v_call_B_VJ_main", "rawType": "object", "type": "string" }, { "name": "j_call_B_VJ_main", "rawType": "object", "type": "string" }, { "name": "isotype", "rawType": "object", "type": "unknown" }, { "name": "isotype_status", "rawType": "object", "type": "unknown" }, { "name": "locus_status", "rawType": "object", "type": "string" }, { "name": "chain_status", "rawType": "object", "type": "string" }, { "name": "rearrangement_status_VDJ", "rawType": "object", "type": "string" }, { "name": "rearrangement_status_VJ", "rawType": "object", "type": "string" } ], "ref": "549f2354-d816-49d9-aa45-9df100806cbc", "rows": [ [ "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG", "B_VJ_187_2_3", "135", "sc5p_v2_hs_PBMC_10k_b", null, "IGK", null, "T", null, null, null, "IGKV1-33,IGKV1D-33", "IGKJ4", null, "IGKC", null, "TGTCAACAATATGACGAACTTCCCGTCACTTTC", null, "CQQYDELPVTF", null, null, null, "IGKV1-33,IGKV1D-33", "IGKJ4", null, "IGKC", null, "T", null, "68.0", "None", "IGKV1-33,IGKV1D-33", "None", "None", "IGKJ4", "None", "IGKC", "None", "None", "None", "IGKV1-33,IGKV1D-33", "IGKJ4", null, null, "Orphan IGK", "Orphan VJ", "None", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC", "B_VDJ_220_3_2_VJ_4_2_1", "2196", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV1-69D,IGHV1-69", "IGHD3-22", "IGHJ3", "IGKV1-8", "IGKJ1", "IGHM", "IGKC", "TGTGCGACTACGTATTACTATGATAGTAGTGGTTATTACCAGAATGATGCTTTTGATATCTGG", "TGTCAACAGTATTATAGTTACCCTCGGACGTTC", "CATTYYYDSSGYYQNDAFDIW", "CQQYYSYPRTF", "IGHV1-69D,IGHV1-69", "IGHD3-22", "IGHJ3", "IGKV1-8", "IGKJ1", "IGHM", "IGKC", "T", "T", "51.0", "43.0", "IGHV1-69D,IGHV1-69", "IGKV1-8", "IGHD3-22", "IGHJ3", "IGKJ1", "IGHM", "IGKC", "IGHV1-69D,IGHV1-69", "IGHD3-22", "IGHJ3", "IGKV1-8", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG", "B_VDJ_85_1_1_VJ_194_1_1", "1750", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV1-2", null, "IGHJ3", "IGLV5-45", "IGLJ3", "IGHM", "IGLC3", "TGTGCGAGAGAGATAGAGGGGGACGGTGTTTTTGAAATCTGG", "TGTATGATTTGGCACAGCAGCGCTTGGGTGGTC", "CAREIEGDGVFEIW", "CMIWHSSAWVV", "IGHV1-2", null, "IGHJ3", "IGLV5-45", "IGLJ3", "IGHM", "IGLC3", "T", "T", "47.0", "90.0", "IGHV1-2", "IGLV5-45", "None", "IGHJ3", "IGLJ3", "IGHM", "IGLC3", "IGHV1-2", "None", "IGHJ3", "IGLV5-45", "IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCTTGAGAC", "B_VDJ_147_4_6_VJ_50_1_1", "1751", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV5-51", null, "IGHJ3", "IGKV1D-8", "IGKJ2", "IGHM", "IGKC", "TGTGCGAGACATATCCGTGGGAACAGATTTGGCAATGATGCTTTTGATATCTGG", "TGTCAACAGTATTATAGTTTCCCGTACACTTTT", "CARHIRGNRFGNDAFDIW", "CQQYYSFPYTF", "IGHV5-51", null, "IGHJ3", "IGKV1D-8", "IGKJ2", "IGHM", "IGKC", "T", "T", "80.0", "22.0", "IGHV5-51", "IGKV1D-8", "None", "IGHJ3", "IGKJ2", "IGHM", "IGKC", "IGHV5-51", "None", "IGHJ3", "IGKV1D-8", "IGKJ2", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAACGGGAGCGACGTA", "B_VDJ_145_2_1_VJ_56_2_1", "1752", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV4-4", "IGHD6-13", "IGHJ3", "IGLV3-19", "IGLJ2,IGLJ3", "IGHM", "IGLC", "TGTGCGAGAGTAGGCTATAGAGCAGCAGCTGGTACTGATGCTTTTGATATCTGG", "TGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTC", "CARVGYRAAAGTDAFDIW", "CNSRDSSGNHVVF", "IGHV4-4", "IGHD6-13", "IGHJ3", "IGLV3-19", "IGLJ2,IGLJ3", "IGHM", "IGLC", "T", "T", "18.0", "14.0", "IGHV4-4", "IGLV3-19", "IGHD6-13", "IGHJ3", "IGLJ2,IGLJ3", "IGHM", "IGLC", "IGHV4-4", "IGHD6-13", "IGHJ3", "IGLV3-19", "IGLJ2,IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAACGGGCACTGTTAG", "B_VDJ_189_2_3_VJ_164_4_1", "1753", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV4-39", "IGHD3-22", "IGHJ3", "IGLV3-21", "IGLJ2,IGLJ3", "IGHM", "IGLC", "TGTGCGAGACGCCTCATTACTATGATAGAGGGAGGTGCTTTTGATATCTGG", "TGTCAGGTGTGGGATAGTAGTAGTGATCATGTGGTATTC", "CARRLITMIEGGAFDIW", "CQVWDSSSDHVVF", "IGHV4-39", "IGHD3-22", "IGHJ3", "IGLV3-21", "IGLJ2,IGLJ3", "IGHM", "IGLC", "T", "T", "26.0", "18.0", "IGHV4-39", "IGLV3-21", "IGHD3-22", "IGHJ3", "IGLJ2,IGLJ3", "IGHM", "IGLC", "IGHV4-39", "IGHD3-22", "IGHJ3", "IGLV3-21", "IGLJ2,IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAAGATGAGGATGCGT", "B_VDJ_47_9_7_VJ_78_3_1", "1754", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-30", null, "IGHJ4", "IGKV2D-28,IGKV2-28", "IGKJ2", "IGHM", "IGKC", "TGTGCGAAAGTCATGATAGAACACCCATCGAACAGGGGCCACTTTGACTACTGG", "TGCATGCAAGCTCTACAAACTCCGTACACTTTT", "CAKVMIEHPSNRGHFDYW", "CMQALQTPYTF", "IGHV3-30", null, "IGHJ4", "IGKV2D-28,IGKV2-28", "IGKJ2", "IGHM", "IGKC", "T", "T", "30.0", "59.0", "IGHV3-30", "IGKV2D-28,IGKV2-28", "None", "IGHJ4", "IGKJ2", "IGHM", "IGKC", "IGHV3-30", "None", "IGHJ4", "IGKV2D-28,IGKV2-28", "IGKJ2", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAAGATGGTCGAATCT", "B_VDJ_35_12_5_VJ_133_1_1", "1755", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-15", "IGHD1-26", "IGHJ4", "IGLV6-57", "IGLJ2,IGLJ3", "IGHM", "IGLC", "TGTACCACAGACGACGAAAAACGCCCCTATAGTGGGAGCTACCTCCCATTTGACTACTGG", "TGTCAGTCTTATGATAGCAGCAATGTGGTATTC", "CTTDDEKRPYSGSYLPFDYW", "CQSYDSSNVVF", "IGHV3-15", "IGHD1-26", "IGHJ4", "IGLV6-57", "IGLJ2,IGLJ3", "IGHM", "IGLC", "T", "T", "26.0", "40.0", "IGHV3-15", "IGLV6-57", "IGHD1-26", "IGHJ4", "IGLJ2,IGLJ3", "IGHM", "IGLC", "IGHV3-15", "IGHD1-26", "IGHJ4", "IGLV6-57", "IGLJ2,IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAAGATGGTGAGGGAG", "B_VDJ_8_10_2_VJ_204_3_1", "1756", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV4-61", "IGHD2-21", "IGHJ6", "IGLV2-14", "IGLJ3", "IGHM", "IGLC3", "TGTGCGAGAGAGACGACTCCCGTGGTGACTGCTTCCACATACTACTACTACTACGGTATGGACGTCTGG", "TGCAGCTCATATACAAGCAGCAGCACTTGGGTGTTC", "CARETTPVVTASTYYYYYGMDVW", "CSSYTSSSTWVF", "IGHV4-61", "IGHD2-21", "IGHJ6", "IGLV2-14", "IGLJ3", "IGHM", "IGLC3", "T", "T", "15.0", "54.0", "IGHV4-61", "IGLV2-14", "IGHD2-21", "IGHJ6", "IGLJ3", "IGHM", "IGLC3", "IGHV4-61", "IGHD2-21", "IGHJ6", "IGLV2-14", "IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAAGTAGCAGATCCAT", "B_VDJ_54_11_1_VJ_206_2_1", "1749", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV1-2", "IGHD6-19", "IGHJ6", "IGKV1-27", "IGKJ3", "IGHM", "IGKC", "TGTGCGAGGGGGGGTCGTGTGTCAGTGGCTGTGTATTGGGACTACTACTACTACGGTATGGACGTCTGG", "TGTCAAAAGTATAACAGTGCCCCATTCACTTTC", "CARGGRVSVAVYWDYYYYGMDVW", "CQKYNSAPFTF", "IGHV1-2", "IGHD6-19", "IGHJ6", "IGKV1-27", "IGKJ3", "IGHM", "IGKC", "T", "T", "42.0", "70.0", "IGHV1-2", "IGKV1-27", "IGHD6-19", "IGHJ6", "IGKJ3", "IGHM", "IGKC", "IGHV1-2", "IGHD6-19", "IGHJ6", "IGKV1-27", "IGKJ3", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAAGTAGGTACAAGTA", "B_VDJ_222_7_1_VJ_69_3_1", "1757", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV2-5", "IGHD3-9", "IGHJ3", "IGKV1-5", "IGKJ1", "IGHM", "IGKC", "TGTGCACACAGCGCCCAATATTACGATATTTTGACTGGTTATTATAAGGCGCCGTGGGGGGGTGCTTTTGATATCTGG", "TGCCAACAGTATAATAGTTATTCGTGGACGTTC", "CAHSAQYYDILTGYYKAPWGGAFDIW", "CQQYNSYSWTF", "IGHV2-5", "IGHD3-9", "IGHJ3", "IGKV1-5", "IGKJ1", "IGHM", "IGKC", "T", "T", "34.0", "49.0", "IGHV2-5", "IGKV1-5", "IGHD3-9", "IGHJ3", "IGKJ1", "IGHM", "IGKC", "IGHV2-5", "IGHD3-9", "IGHJ3", "IGKV1-5", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACACGTAGACACGAC", "B_VDJ_42_8_8_VJ_58_2_1", "1759", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-7", "IGHD1-26", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ2", "IGHM", "IGKC", "TGTGCGAGAGATGATTTCGGGGGAGCTACTTTTTATTCCTCTTTTGACTACTGG", "TGTCAACAGAGTTACAGTACCCCGTACACTTTT", "CARDDFGGATFYSSFDYW", "CQQSYSTPYTF", "IGHV3-7", "IGHD1-26", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ2", "IGHM", "IGKC", "T", "T", "33.0", "43.0", "IGHV3-7", "IGKV1-39,IGKV1D-39", "IGHD1-26", "IGHJ4", "IGKJ2", "IGHM", "IGKC", "IGHV3-7", "IGHD1-26", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ2", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACACGTCACAGACAG", "B_VDJ_154_3_1_VJ_151_5_1", "1760", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV1-8", "IGHD3-3", "IGHJ3", "IGKV3-20", "IGKJ1", "IGHM", "IGKC", "TGTGCGAGAGCCGCGAAGATTTTTGGAGTGGTTACCGCTTTTGATATCTGG", "TGTCAGCAGTATGGTAGCTCACCGTGGACGTTC", "CARAAKIFGVVTAFDIW", "CQQYGSSPWTF", "IGHV1-8", "IGHD3-3", "IGHJ3", "IGKV3-20", "IGKJ1", "IGHM", "IGKC", "T", "T", "44.0", "29.0", "IGHV1-8", "IGKV3-20", "IGHD3-3", "IGHJ3", "IGKJ1", "IGHM", "IGKC", "IGHV1-8", "IGHD3-3", "IGHJ3", "IGKV3-20", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACACGTTCCCTTGTG", "B_VDJ_193_4_4_VJ_92_3_1", "1761", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-9", "IGHD6-19", "IGHJ4", "IGKV3-20", "IGKJ2", "IGHM", "IGKC", "TGTGTAAAAGACTATTCTACCAGTGGCTGGTACTACTTTGACTTCTGG", "TGTCAGCAATATGGTAGCTCACTTCCGTACACTTTT", "CVKDYSTSGWYYFDFW", "CQQYGSSLPYTF", "IGHV3-9", "IGHD6-19", "IGHJ4", "IGKV3-20", "IGKJ2", "IGHM", "IGKC", "T", "T", "25.0", "80.0", "IGHV3-9", "IGKV3-20", "IGHD6-19", "IGHJ4", "IGKJ2", "IGHM", "IGKC", "IGHV3-9", "IGHD6-19", "IGHJ4", "IGKV3-20", "IGKJ2", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACCATGCAAGCTGTT", "B_VDJ_87_2_1_VJ_79_2_1", "1762", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-33", "IGHD3-10", "IGHJ6", "IGLV2-14", "IGLJ1", "IGHM", "IGLC1", "TGTGCGAGAGATTGGGTTCGGGGAGTCAACGATATGGACGTCTGG", "TGCAGCTCATATACAAGCAGCAGCACTCGGGTCTTC", "CARDWVRGVNDMDVW", "CSSYTSSSTRVF", "IGHV3-33", "IGHD3-10", "IGHJ6", "IGLV2-14", "IGLJ1", "IGHM", "IGLC1", "T", "T", "24.0", "36.0", "IGHV3-33", "IGLV2-14", "IGHD3-10", "IGHJ6", "IGLJ1", "IGHM", "IGLC1", "IGHV3-33", "IGHD3-10", "IGHJ6", "IGLV2-14", "IGLJ1", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACCATGTCAGTCCCT", "B_VDJ_63_2_1_VJ_37_1_1", "1763", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-49", "IGHD1-26", "IGHJ3", "IGLV2-14", "IGLJ2,IGLJ3", "IGHM", "IGLC", "TGTACTAGACCTCAACGGAAGTGGGAGCTACCCTACCCTGATGCTTTTGATATCTGG", "TGCAGCTCATATACAAGCAGCAGCACTCTATTC", "CTRPQRKWELPYPDAFDIW", "CSSYTSSSTLF", "IGHV3-49", "IGHD1-26", "IGHJ3", "IGLV2-14", "IGLJ2,IGLJ3", "IGHM", "IGLC", "T", "T", "23.0", "74.0", "IGHV3-49", "IGLV2-14", "IGHD1-26", "IGHJ3", "IGLJ2,IGLJ3", "IGHM", "IGLC", "IGHV3-49", "IGHD1-26", "IGHJ3", "IGLV2-14", "IGLJ2,IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACCATGTCCAAGTAC", "B_VDJ_99_2_1_VJ_209_2_1", "1764", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV4-4", "IGHD2-2", "IGHJ6", "IGKV3-20", "IGKJ3", "IGHM", "IGKC", "TGTGCGAGAGTAGTACCAGCTGCCTTCTACGGTATGGACGTCTGG", "TGTCAGCAGTATGGTAGCTCACTTTTCACTTTC", "CARVVPAAFYGMDVW", "CQQYGSSLFTF", "IGHV4-4", "IGHD2-2", "IGHJ6", "IGKV3-20", "IGKJ3", "IGHM", "IGKC", "T", "T", "16.0", "55.0", "IGHV4-4", "IGKV3-20", "IGHD2-2", "IGHJ6", "IGKJ3", "IGHM", "IGKC", "IGHV4-4", "IGHD2-2", "IGHJ6", "IGKV3-20", "IGKJ3", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACCATGTCTAGCACA", "B_VDJ_163_2_1_VJ_70_2_1", "1765", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV4-30-2", "IGHD2-8", "IGHJ6", "IGLV1-47", "IGLJ3", "IGHM", "IGLC3", "TGTGCCGGGGGTTCGGGATATTGTACTAATGGTGTATGCTATCCCCGCGGGTTTGACTACTACTACGGTATGGACGTCTGG", "TGTGCAGCATGGGATGACAGCCCGCCTTGGGTGTTC", "CAGGSGYCTNGVCYPRGFDYYYGMDVW", "CAAWDDSPPWVF", "IGHV4-30-2", "IGHD2-8", "IGHJ6", "IGLV1-47", "IGLJ3", "IGHM", "IGLC3", "T", "T", "17.0", "35.0", "IGHV4-30-2", "IGLV1-47", "IGHD2-8", "IGHJ6", "IGLJ3", "IGHM", "IGLC3", "IGHV4-30-2", "IGHD2-8", "IGHJ6", "IGLV1-47", "IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACCGCGCATGAGCGA", "B_VDJ_118_1_1_VJ_104_2_1", "1758", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV6-1", "IGHD6-6", "IGHJ6", "IGKV4-1", "IGKJ2", "IGHM", "IGKC", "TGTGCAAGAGATGAGGGAATAGCAGCTCGTACGAGAGGGGAGACCCACTACTACTACTACGGTATGGACGTCTGG", "TGTCAGCAATATTATAGTACTCCGTACACTTTT", "CARDEGIAARTRGETHYYYYGMDVW", "CQQYYSTPYTF", "IGHV6-1", "IGHD6-6", "IGHJ6", "IGKV4-1", "IGKJ2", "IGHM", "IGKC", "T", "T", "34.0", "59.0", "IGHV6-1", "IGKV4-1", "IGHD6-6", "IGHJ6", "IGKJ2", "IGHM", "IGKC", "IGHV6-1", "IGHD6-6", "IGHJ6", "IGKV4-1", "IGKJ2", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACGTTGGTCGTTGTA", "B_VDJ_47_8_5_VJ_146_2_1", "1747", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-30", "IGHD5-18,IGHD5-5", "IGHJ4", "IGLV4-69", "IGLJ3", "IGHM", "IGLC3", "TGTGCGAAAGATGATACAGCTATGGTTACGGCCGATTTCTTTGACTACTGG", "TGTCAGACCTGGGGCACTGGCATTTGGGTGTTC", "CAKDDTAMVTADFFDYW", "CQTWGTGIWVF", "IGHV3-30", "IGHD5-18,IGHD5-5", "IGHJ4", "IGLV4-69", "IGLJ3", "IGHM", "IGLC3", "T", "T", "14.0", "11.0", "IGHV3-30", "IGLV4-69", "IGHD5-18,IGHD5-5", "IGHJ4", "IGLJ3", "IGHM", "IGLC3", "IGHV3-30", "IGHD5-18,IGHD5-5", "IGHJ4", "IGLV4-69", "IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACTCCCTCGTACCGG", "B_VDJ_27_2_2_VJ_69_3_1", "1738", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV2-26", "IGHD5-24", "IGHJ4", "IGKV1-5", "IGKJ1", "IGHM", "IGKC", "TGTGCACGGACGCCGAGATGGCTACAATGTTTTGACTACTGG", "TGCCAACAGTATAATAGTTATTCGTGGACGTTC", "CARTPRWLQCFDYW", "CQQYNSYSWTF", "IGHV2-26", "IGHD5-24", "IGHJ4", "IGKV1-5", "IGKJ1", "IGHM", "IGKC", "T", "T", "35.0", "49.0", "IGHV2-26", "IGKV1-5", "IGHD5-24", "IGHJ4", "IGKJ1", "IGHM", "IGKC", "IGHV2-26", "IGHD5-24", "IGHJ4", "IGKV1-5", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACTCTTAGTAGCCGA", "B_VDJ_47_5_6_VJ_84_2_1", "1746", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-30", "IGHD6-19", "IGHJ4", "IGLV6-57", "IGLJ3", "IGHG1", "IGLC3", "TGTGCGAGGGACCAGTGGCTGGCGTACTACTTTGACTACTGG", "TGTCAGTCTTATGATAGCAGCAATCATTGGGTGTTC", "CARDQWLAYYFDYW", "CQSYDSSNHWVF", "IGHV3-30", "IGHD6-19", "IGHJ4", "IGLV6-57", "IGLJ3", "IGHG1", "IGLC3", "T", "T", "14.0", "44.0", "IGHV3-30", "IGLV6-57", "IGHD6-19", "IGHJ4", "IGLJ3", "IGHG1", "IGLC3", "IGHV3-30", "IGHD6-19", "IGHJ4", "IGLV6-57", "IGLJ3", "IgG", "IgG", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACTCTTTCCGATATG", "B_VDJ_172_1_2_VJ_21_1_1", "1730", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV2-5", "IGHD4-4,IGHD4-11", "IGHJ4", "IGKV2-30", "IGKJ1", "IGHM", "IGKC", "TGTGCACACAGATACTACAGTAACATTGACTACTGG", "TGCATGCAAGGTACACACTGGCCGTGGACGTTC", "CAHRYYSNIDYW", "CMQGTHWPWTF", "IGHV2-5", "IGHD4-4,IGHD4-11", "IGHJ4", "IGKV2-30", "IGKJ1", "IGHM", "IGKC", "T", "T", "39.0", "34.0", "IGHV2-5", "IGKV2-30", "IGHD4-4,IGHD4-11", "IGHJ4", "IGKJ1", "IGHM", "IGKC", "IGHV2-5", "IGHD4-4,IGHD4-11", "IGHJ4", "IGKV2-30", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACTGGTTCATTTGGG", "B_VDJ_160_10_1_VJ_72_2_1", "1731", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-74", "IGHD3-22", "IGHJ6", "IGKV1-9", "IGKJ3", "IGHD", "IGKC", "TGTGCAAGAGATTGGGGTTACTATGATAGTAGTGGTTACTCCCCCAGGGGTTACTACTACTACTACGGTATGGACGTCTGG", "TGTCAACAGCTTAATAGTTACTCTTTCACTTTC", "CARDWGYYDSSGYSPRGYYYYYGMDVW", "CQQLNSYSFTF", "IGHV3-74", "IGHD3-22", "IGHJ6", "IGKV1-9", "IGKJ3", "IGHD", "IGKC", "T", "T", "14.0", "54.0", "IGHV3-74", "IGKV1-9", "IGHD3-22", "IGHJ6", "IGKJ3", "IGHD", "IGKC", "IGHV3-74", "IGHD3-22", "IGHJ6", "IGKV1-9", "IGKJ3", "IgD", "IgD", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACTTTCAGCTCAACT", "B_VDJ_47_6_1_VJ_199_3_1", "1732", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-30", null, "IGHJ4", "IGKV3-15", "IGKJ1", "IGHM", "IGKC", "TGTGCGAAAGATCGGGTAGGATACGGTGACTACGTGGACTACTGG", "TGTCAGCAGTATAATAACTGGCCTCCCTGGACGTTC", "CAKDRVGYGDYVDYW", "CQQYNNWPPWTF", "IGHV3-30", null, "IGHJ4", "IGKV3-15", "IGKJ1", "IGHM", "IGKC", "T", "T", "19.0", "61.0", "IGHV3-30", "IGKV3-15", "None", "IGHJ4", "IGKJ1", "IGHM", "IGKC", "IGHV3-30", "None", "IGHJ4", "IGKV3-15", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AACTTTCCAATGTTGC", "B_VDJ_56_1_3_VJ_167_3_1", "1733", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV4-39", null, "IGHJ4", "IGLV1-40", "IGLJ1", "IGHM", "IGLC1", "TGTGCGAGACTAGGCAGCAGCCCGTACTACTGG", "TGCCAGTCCTATGACAGCAGCCTGAGTGGTTATGTCTTC", "CARLGSSPYYW", "CQSYDSSLSGYVF", "IGHV4-39", null, "IGHJ4", "IGLV1-40", "IGLJ1", "IGHM", "IGLC1", "T", "T", "43.0", "29.0", "IGHV4-39", "IGLV1-40", "None", "IGHJ4", "IGLJ1", "IGHM", "IGLC1", "IGHV4-39", "None", "IGHJ4", "IGLV1-40", "IGLJ1", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGCCGCGTTTGTGTG", "B_VDJ_39_1_1_VJ_91_1_1", "1734", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-49", null, "IGHJ6", "IGKV1D-8", "IGKJ1", "IGHM", "IGKC", "TGTACTAGATACTATGGGGACGTCTGG", "TGTCAACAGTATTATAGTTTCCCGTGGACGTTC", "CTRYYGDVW", "CQQYYSFPWTF", "IGHV3-49", null, "IGHJ6", "IGKV1D-8", "IGKJ1", "IGHM", "IGKC", "T", "T", "14.0", "59.0", "IGHV3-49", "IGKV1D-8", "None", "IGHJ6", "IGKJ1", "IGHM", "IGKC", "IGHV3-49", "None", "IGHJ6", "IGKV1D-8", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGGAGCAGCTGCCCA", "B_VDJ_31_11_1_VJ_40_1_1|B_VDJ_31_11_1_VJ_43_3_4", "1735|1736", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL|IGL", "T", "T|T", "IGHV3-23,IGHV3-23D", "IGHD2-15", "IGHJ3", "IGLV2-23|IGLV3-16", "IGLJ1|IGLJ2,IGLJ3", "IGHD", "IGLC1|IGLC", "TGTGCGAAAGATTTCCATCGGCTAACCCTCCTTCGATATTGTAGTGGTGGTAGCTGCTACTCGGCTTTTGATATCTGG", "TGCTGCTCATATGCAGGTAGTAGCACTTATGTCTTC|TGTCTATCAGCAGACAGCAGTGGTACTTATGTATTC", "CAKDFHRLTLLRYCSGGSCYSAFDIW", "CCSYAGSSTYVF|CLSADSSGTYVF", "IGHV3-23,IGHV3-23D", "IGHD2-15", "IGHJ3", "IGLV2-23|IGLV3-16", "IGLJ1|IGLJ2,IGLJ3", "IGHD", "IGLC1|IGLC", "T", "T|T", "13.0", "90.0", "IGHV3-23,IGHV3-23D", "IGLV2-23", "IGHD2-15", "IGHJ3", "IGLJ1", "IGHD", "IGLC1", "IGHV3-23,IGHV3-23D", "IGHD2-15", "IGHJ3", "IGLV2-23", "IGLJ1", "IgD", "Multi", "IGH + Extra VJ", "Extra pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGGAGCAGTTTGCGT", "B_VDJ_47_10_4_VJ_185_4_1", "1729", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-30", "IGHD3-22", "IGHJ4", "IGLV3-25", "IGLJ2,IGLJ3", "IGHM", "IGLC", "TGTGCGAAAGATCATTACTATGATAGTAGTGGTTATTACAGTGGTCTTGGCTACTGG", "TGTCAATCAGCAGACAGCAGTGGTACTTATAGGGTGGTATTC", "CAKDHYYDSSGYYSGLGYW", "CQSADSSGTYRVVF", "IGHV3-30", "IGHD3-22", "IGHJ4", "IGLV3-25", "IGLJ2,IGLJ3", "IGHM", "IGLC", "T", "T", "22.0", "21.0", "IGHV3-30", "IGLV3-25", "IGHD3-22", "IGHJ4", "IGLJ2,IGLJ3", "IGHM", "IGLC", "IGHV3-30", "IGHD3-22", "IGHJ4", "IGLV3-25", "IGLJ2,IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGGAGCCAGCCTTTC", "B_VDJ_91_2_1_VJ_26_3_1", "1737", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV1-24", "IGHD2-2", "IGHJ6", "IGKV3-20", "IGKJ4", "IGHM", "IGKC", "TGTGCAACAGGCTTAGTAGTACCAGCTGCTATCCTCTATGGTATGGACGTCTGG", "TGTCAGCAGTATGGTAGCTCACGAGGGCTCACTTTC", "CATGLVVPAAILYGMDVW", "CQQYGSSRGLTF", "IGHV1-24", "IGHD2-2", "IGHJ6", "IGKV3-20", "IGKJ4", "IGHM", "IGKC", "T", "T", "41.0", "50.0", "IGHV1-24", "IGKV3-20", "IGHD2-2", "IGHJ6", "IGKJ4", "IGHM", "IGKC", "IGHV1-24", "IGHD2-2", "IGHJ6", "IGKV3-20", "IGKJ4", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGGAGCGTAATCACC", "B_VDJ_186_4_1_VJ_4_2_1", "1739", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV4-34", "IGHD4-17", "IGHJ3", "IGKV1-8", "IGKJ1", "IGHM", "IGKC", "TGTGCGAGTCGGGTGCATGGCTTAGTTACGGTGACTACGGGGGGAGCTTTTGATATCTGG", "TGTCAACAGTATTATAGTTACCCTCCGGCGTTC", "CASRVHGLVTVTTGGAFDIW", "CQQYYSYPPAF", "IGHV4-34", "IGHD4-17", "IGHJ3", "IGKV1-8", "IGKJ1", "IGHM", "IGKC", "T", "T", "38.0", "35.0", "IGHV4-34", "IGKV1-8", "IGHD4-17", "IGHJ3", "IGKJ1", "IGHM", "IGKC", "IGHV4-34", "IGHD4-17", "IGHJ3", "IGKV1-8", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGGCAGAGTCATCCA", "B_VDJ_144_10_1_VJ_79_3_8", "1740", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-7", null, "IGHJ6", "IGLV2-14", "IGLJ1", "IGHA1", "IGLC1", "TGCGCGAGGGGCGGTGCGGCGGTGACCACTTATTATTATTACTTCTACGGTATGGACGCCTGG", "TGCTGCTCATATTCAAGCACCAATACACTATATGTCTTC", "CARGGAAVTTYYYYFYGMDAW", "CCSYSSTNTLYVF", "IGHV3-7", null, "IGHJ6", "IGLV2-14", "IGLJ1", "IGHA1", "IGLC1", "T", "T", "46.0", "119.0", "IGHV3-7", "IGLV2-14", "None", "IGHJ6", "IGLJ1", "IGHA1", "IGLC1", "IGHV3-7", "None", "IGHJ6", "IGLV2-14", "IGLJ1", "IgA", "IgA", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGGCAGAGTCGATAA", "B_VDJ_88_8_3_VJ_32_1_1", "1741", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-11", "IGHD3-3", "IGHJ4", "IGLV1-36", "IGLJ1", "IGHM", "IGLC1", "TGTGCGAGAGATGGGAGTGGTTATCTCGAACAATACTACTTTGACTACTGG", "TGTGCAGCATGGGATGACAGCCTGAATGGTTATGTCTTC", "CARDGSGYLEQYYFDYW", "CAAWDDSLNGYVF", "IGHV3-11", "IGHD3-3", "IGHJ4", "IGLV1-36", "IGLJ1", "IGHM", "IGLC1", "T", "T", "11.0", "15.0", "IGHV3-11", "IGLV1-36", "IGHD3-3", "IGHJ4", "IGLJ1", "IGHM", "IGLC1", "IGHV3-11", "IGHD3-3", "IGHJ4", "IGLV1-36", "IGLJ1", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGGCAGGTCTCCATC", "B_VDJ_42_8_6_VJ_92_2_1", "95", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-7", "IGHD3-22", "IGHJ4", "IGKV3-20", "IGKJ2", "IGHM", "IGKC", "TGTGCGAGAGATGTACGAGTTTACTATGATAGTAGTGGTTACTCTGACTACTGG", "TGTCAGCAGTATGGTAGCTCACCGTACACTTTT", "CARDVRVYYDSSGYSDYW", "CQQYGSSPYTF", "IGHV3-7", "IGHD3-22", "IGHJ4", "IGKV3-20", "IGKJ2", "IGHM", "IGKC", "T", "T", "15.0", "20.0", "IGHV3-7", "IGKV3-20", "IGHD3-22", "IGHJ4", "IGKJ2", "IGHM", "IGKC", "IGHV3-7", "IGHD3-22", "IGHJ4", "IGKV3-20", "IGKJ2", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGGTTCAGCAGATCG", "B_VDJ_56_7_8_VJ_17_3_1", "1742", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV4-39", "IGHD1-26", "IGHJ4", "IGLV1-44", "IGLJ1", "IGHM", "IGLC1", "TGTGCGAGACTAATCAAGTATAGTGGGAGCTATGAGATGGTGGACTACTGG", "TGTGCAGCATGGGATGACAGCCTGAATGGTTATTATGTCTTC", "CARLIKYSGSYEMVDYW", "CAAWDDSLNGYYVF", "IGHV4-39", "IGHD1-26", "IGHJ4", "IGLV1-44", "IGLJ1", "IGHM", "IGLC1", "T", "T", "30.0", "35.0", "IGHV4-39", "IGLV1-44", "IGHD1-26", "IGHJ4", "IGLJ1", "IGHM", "IGLC1", "IGHV4-39", "IGHD1-26", "IGHJ4", "IGLV1-44", "IGLJ1", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AAGTCTGGTCTAACGT", "B_VDJ_89_5_3_VJ_155_2_1", "1743", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-21", "IGHD3-22", "IGHJ6", "IGKV1-33,IGKV1D-33", "IGKJ3", "IGHM", "IGKC", "TGTGCGAGAGGGGGATTTATTACTATGATAGGCTACGGTATGGACGTCTGG", "TGTCAACAGTATGATAATCTCCCATTCACTTTC", "CARGGFITMIGYGMDVW", "CQQYDNLPFTF", "IGHV3-21", "IGHD3-22", "IGHJ6", "IGKV1-33,IGKV1D-33", "IGKJ3", "IGHM", "IGKC", "T", "T", "13.0", "50.0", "IGHV3-21", "IGKV1-33,IGKV1D-33", "IGHD3-22", "IGHJ6", "IGKJ3", "IGHM", "IGKC", "IGHV3-21", "IGHD3-22", "IGHJ6", "IGKV1-33,IGKV1D-33", "IGKJ3", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AATCCAGAGGCGTACA", "B_VDJ_160_8_3_VJ_17_2_1", "1744", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-74", "IGHD2-15", "IGHJ6", "IGLV1-44", "IGLJ1", "IGHM", "IGLC1", "TGTGCAAGAGACCTGAGATGGTGTAGTGGTGGTAGCTGCTACGGGAACTACTACGGTATGGACGTCTGG", "TGTGCAGCATGGGATGACAGCCTGAATGGTCAAGTCTTC", "CARDLRWCSGGSCYGNYYGMDVW", "CAAWDDSLNGQVF", "IGHV3-74", "IGHD2-15", "IGHJ6", "IGLV1-44", "IGLJ1", "IGHM", "IGLC1", "T", "T", "51.0", "70.0", "IGHV3-74", "IGLV1-44", "IGHD2-15", "IGHJ6", "IGLJ1", "IGHM", "IGLC1", "IGHV3-74", "IGHD2-15", "IGHJ6", "IGLV1-44", "IGLJ1", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AATCCAGAGTTTAGGA", "B_VDJ_47_6_8_VJ_104_3_1|B_VDJ_47_6_8_VJ_112_2_1", "1745|1766", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL|IGK", "T", "T|T", "IGHV3-30", "IGHD6-13", "IGHJ4", "IGLV1-47|IGKV4-1", "IGLJ2,IGLJ3|IGKJ2", "IGHM", "IGLC|IGKC", "TGTGCGAAAGATGATGGGGACGCAGCAGCTGGTTTAATCTACTGG", "TGTGCAGCATGGGATGACAGCCTGAGTGGTGTGGTATTC|TGTCAGCAATATTATAGTACTCCCTTGTACACTTTT", "CAKDDGDAAAGLIYW", "CAAWDDSLSGVVF|CQQYYSTPLYTF", "IGHV3-30", "IGHD6-13", "IGHJ4", "IGLV1-47|IGKV4-1", "IGLJ2,IGLJ3|IGKJ2", "IGHM", "IGLC|IGKC", "T", "T|T", "17.0", "35.0", "IGHV3-30", "IGLV1-47", "IGHD6-13", "IGHJ4", "IGLJ2,IGLJ3", "IGHM", "IGLC", "IGHV3-30", "IGHD6-13", "IGHJ4", "IGLV1-47", "IGLJ2,IGLJ3", "IgM", "Multi", "IGH + Extra VJ", "Extra pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_AATCCAGCATCTATGG", "B_VDJ_45_1_1_VJ_107_2_1", "1767", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-43", null, "IGHJ4", "IGLV1-51", "IGLJ2,IGLJ3", "IGHM", "IGLC", "TGTGCAAAAGACGGGGGGGGGGAAGAGGCTTTAGAGCTACCAGACTACTGG", "TGCGGAACATGGGATAGCAGCCTGAGTGCGGTGGTATTC", "CAKDGGGEEALELPDYW", "CGTWDSSLSAVVF", "IGHV3-43", null, "IGHJ4", "IGLV1-51", "IGLJ2,IGLJ3", "IGHM", "IGLC", "T", "T", "26.0", "33.0", "IGHV3-43", "IGLV1-51", "None", "IGHJ4", "IGLJ2,IGLJ3", "IGHM", "IGLC", "IGHV3-43", "None", "IGHJ4", "IGLV1-51", "IGLJ2,IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACCAAGTGTAAGTA", "B_VDJ_209_2_1_VJ_58_2_1", "1768", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV4-30-4,IGHV4-30-2", "IGHD6-19", "IGHJ3", "IGKV1-39,IGKV1D-39", "IGKJ2", "IGHG4A", "IGKC", "TGTGCGAGAAAGGATAGCAGTGGTTCTGATGCTTTTGATTTGTGG", "TGTCAACAGAGTTATAGTACCCCGTACACTTTT", "CARKDSSGSDAFDLW", "CQQSYSTPYTF", "IGHV4-30-4,IGHV4-30-2", "IGHD6-19", "IGHJ3", "IGKV1-39,IGKV1D-39", "IGKJ2", "IGHG4A", "IGKC", "T", "T", "8.0", "72.0", "IGHV4-30-4,IGHV4-30-2", "IGKV1-39,IGKV1D-39", "IGHD6-19", "IGHJ3", "IGKJ2", "IGHG4A", "IGKC", "IGHV4-30-4,IGHV4-30-2", "IGHD6-19", "IGHJ3", "IGKV1-39,IGKV1D-39", "IGKJ2", "IgG", "IgG", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACCAATCATCGATG", "B_VDJ_42_5_3_VJ_58_3_1", "1778", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-7", "IGHD5-18,IGHD5-5", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ2", "IGHM", "IGKC", "TGTGCGAGAGATGTCGTACAGCTATGGTACCAAATTGACTACTGG", "TGTCAACAGAGTTACAGTACCCCTCCGAACACTTTT", "CARDVVQLWYQIDYW", "CQQSYSTPPNTF", "IGHV3-7", "IGHD5-18,IGHD5-5", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ2", "IGHM", "IGKC", "T", "T", "21.0", "60.0", "IGHV3-7", "IGKV1-39,IGKV1D-39", "IGHD5-18,IGHD5-5", "IGHJ4", "IGKJ2", "IGHM", "IGKC", "IGHV3-7", "IGHD5-18,IGHD5-5", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ2", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACCAATCTATCCCG", "B_VDJ_111_3_2_VJ_86_1_1", "1790", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV4-59", "IGHD5-18,IGHD5-5", "IGHJ5", "IGKV1D-12", "IGKJ5", "IGHM", "IGKC", "TGTGCGAAATACGTGGATACAGCTATGAATCAGTTCGACCCCTGG", "TGTCAACAGGCTAACAGTTTCCCGATCACCTTC", "CAKYVDTAMNQFDPW", "CQQANSFPITF", "IGHV4-59", "IGHD5-18,IGHD5-5", "IGHJ5", "IGKV1D-12", "IGKJ5", "IGHM", "IGKC", "T", "T", "20.0", "28.0", "IGHV4-59", "IGKV1D-12", "IGHD5-18,IGHD5-5", "IGHJ5", "IGKJ5", "IGHM", "IGKC", "IGHV4-59", "IGHD5-18,IGHD5-5", "IGHJ5", "IGKV1D-12", "IGKJ5", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACCCTCATATGAGA", "B_VDJ_57_4_1_VJ_151_7_2", "1791", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV1-69", "IGHD3-22", "IGHJ4", "IGKV3-20", "IGKJ1", "IGHM", "IGKC", "TGTGCGAGAGGTCTTCATTACTATGATAGTAGTGGTCGTTCACTTTACTACTTTGACTACTGG", "TGTCAGCAGTATGGTAGCTCACCTCCGGGACAGACGTTC", "CARGLHYYDSSGRSLYYFDYW", "CQQYGSSPPGQTF", "IGHV1-69", "IGHD3-22", "IGHJ4", "IGKV3-20", "IGKJ1", "IGHM", "IGKC", "T", "T", "17.0", "44.0", "IGHV1-69", "IGKV3-20", "IGHD3-22", "IGHJ4", "IGKJ1", "IGHM", "IGKC", "IGHV1-69", "IGHD3-22", "IGHJ4", "IGKV3-20", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACCCTTCAGAAATG", "B_VDJ_47_2_1_VJ_199_2_1", "1792", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-30", null, "IGHJ4", "IGKV3-15", "IGKJ1", "IGHM", "IGKC", "TGTGCCAATCAGCCCCCCAGTCTCTATTGG", "TGTCAGCAATATAATAACTGGCCCGGGACGTTC", "CANQPPSLYW", "CQQYNNWPGTF", "IGHV3-30", null, "IGHJ4", "IGKV3-15", "IGKJ1", "IGHM", "IGKC", "T", "T", "16.0", "79.0", "IGHV3-30", "IGKV3-15", "None", "IGHJ4", "IGKJ1", "IGHM", "IGKC", "IGHV3-30", "None", "IGHJ4", "IGKV3-15", "IGKJ1", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACCGGAGATCCGAG", "B_VDJ_175_9_1_VJ_57_1_1", "1793", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-48", "IGHD3-16", "IGHJ6", "IGLV2-8", "IGLJ1", "IGHM", "IGLC1", "TGTGCGAGAGTGGGTTATGATTACGTTTGGGGGAGTTATCGTTATACGGGGGTTATGGACGTCTGG", "TGCAGCTCATATGCAGGCAGCTCTTATGTCTTC", "CARVGYDYVWGSYRYTGVMDVW", "CSSYAGSSYVF", "IGHV3-48", "IGHD3-16", "IGHJ6", "IGLV2-8", "IGLJ1", "IGHM", "IGLC1", "T", "T", "19.0", "44.0", "IGHV3-48", "IGLV2-8", "IGHD3-16", "IGHJ6", "IGLJ1", "IGHM", "IGLC1", "IGHV3-48", "IGHD3-16", "IGHJ6", "IGLV2-8", "IGLJ1", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACTGACAGTCAGCC", "B_VDJ_154_5_2_VJ_2_2_1", "1794", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV1-8", "IGHD3-22", "IGHJ3", "IGKV2D-28,IGKV2-28", "IGKJ4", "IGHM", "IGKC", "TGTGCGAGAGGCCGCCCGTATTACTATGATAGTAGTGGTTACCCATATGATGCTTTTGATATCTGG", "TGCATGCAAGCTCTACAAACCCCACTCACTTTC", "CARGRPYYYDSSGYPYDAFDIW", "CMQALQTPLTF", "IGHV1-8", "IGHD3-22", "IGHJ3", "IGKV2D-28,IGKV2-28", "IGKJ4", "IGHM", "IGKC", "T", "T", "25.0", "41.0", "IGHV1-8", "IGKV2D-28,IGKV2-28", "IGHD3-22", "IGHJ3", "IGKJ4", "IGHM", "IGKC", "IGHV1-8", "IGHD3-22", "IGHJ3", "IGKV2D-28,IGKV2-28", "IGKJ4", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACTGAGTCAAAGCG", "B_VDJ_206_11_14_VJ_97_2_1", "1795", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-23,IGHV3-23D", "IGHD6-13", "IGHJ4", "IGKV2-30", "IGKJ4", "IGHM", "IGKC", "TGTGCGAAATTCGACATAGCAGCAGCTGATACGGGTAAAGGAGAGGACTACTGG", "TGCATGCAAGGTACACACTGGCCTCCGCTCACTTTC", "CAKFDIAAADTGKGEDYW", "CMQGTHWPPLTF", "IGHV3-23,IGHV3-23D", "IGHD6-13", "IGHJ4", "IGKV2-30", "IGKJ4", "IGHM", "IGKC", "T", "T", "12.0", "48.0", "IGHV3-23,IGHV3-23D", "IGKV2-30", "IGHD6-13", "IGHJ4", "IGKJ4", "IGHM", "IGKC", "IGHV3-23,IGHV3-23D", "IGHD6-13", "IGHJ4", "IGKV2-30", "IGKJ4", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACACTGAGTTGTCTTT", "B_VDJ_191_2_1_VJ_202_1_1", "1796", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV4-34", null, "IGHJ5", "IGLV2-23", "IGLJ2,IGLJ3", "IGHM", "IGLC", "TGTGCGAGAGGCGGCGATCCCACCTGGTTCGACCCCTGG", "TGCTGCTCATATGCAGGTAGTAGCATCGTGGTATTC", "CARGGDPTWFDPW", "CCSYAGSSIVVF", "IGHV4-34", null, "IGHJ5", "IGLV2-23", "IGLJ2,IGLJ3", "IGHM", "IGLC", "T", "T", "37.0", "31.0", "IGHV4-34", "IGLV2-23", "None", "IGHJ5", "IGLJ2,IGLJ3", "IGHM", "IGLC", "IGHV4-34", "None", "IGHJ5", "IGLV2-23", "IGLJ2,IGLJ3", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACAGCCGTCAGCATGT", "B_VDJ_47_9_1_VJ_198_4_1", "1797", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGK", "T", "T", "IGHV3-30", "IGHD2-21", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ4", "IGHM", "IGKC", "TGTGCGAAGGAACGGGTGGTGACTGCTATTCCTGTGGTTATCTTTGACTACTGG", "TGTCAACAGAGTTACAGTACCCCTAGGCTCACTTTC", "CAKERVVTAIPVVIFDYW", "CQQSYSTPRLTF", "IGHV3-30", "IGHD2-21", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ4", "IGHM", "IGKC", "T", "T", "15.0", "19.0", "IGHV3-30", "IGKV1-39,IGKV1D-39", "IGHD2-21", "IGHJ4", "IGKJ4", "IGHM", "IGKC", "IGHV3-30", "IGHD2-21", "IGHJ4", "IGKV1-39,IGKV1D-39", "IGKJ4", "IgM", "IgM", "IGH + IGK", "Single pair", "standard", "standard" ], [ "sc5p_v2_hs_PBMC_10k_b_ACAGCTACACCACGTG", "B_VDJ_88_5_2_VJ_167_3_1", "1798", "sc5p_v2_hs_PBMC_10k_b", "IGH", "IGL", "T", "T", "IGHV3-11", "IGHD4-17", "IGHJ4", "IGLV1-40", "IGLJ1", "IGHM", "IGLC1", "TGTGCGAGACCTTACGGTGACTACGCCTACTTTGACTACTGG", "TGCCAGTCCTATGACAGCAGCCTGAGTGGTTATGTCTTC", "CARPYGDYAYFDYW", "CQSYDSSLSGYVF", "IGHV3-11", "IGHD4-17", "IGHJ4", "IGLV1-40", "IGLJ1", "IGHM", "IGLC1", "T", "T", "52.0", "68.0", "IGHV3-11", "IGLV1-40", "IGHD4-17", "IGHJ4", "IGLJ1", "IGHM", "IGLC1", "IGHV3-11", "IGHD4-17", "IGHJ4", "IGLV1-40", "IGLJ1", "IgM", "IgM", "IGH + IGL", "Single pair", "standard", "standard" ] ], "shape": { "columns": 47, "rows": 2493 } }, "text/html": [ "
| \n", " | clone_id | \n", "clone_id_rank | \n", "sample_id | \n", "locus_VDJ | \n", "locus_VJ | \n", "productive_VDJ | \n", "productive_VJ | \n", "v_call_VDJ | \n", "d_call_VDJ | \n", "j_call_VDJ | \n", "... | \n", "d_call_B_VDJ_main | \n", "j_call_B_VDJ_main | \n", "v_call_B_VJ_main | \n", "j_call_B_VJ_main | \n", "isotype | \n", "isotype_status | \n", "locus_status | \n", "chain_status | \n", "rearrangement_status_VDJ | \n", "rearrangement_status_VJ | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG | \n", "B_VJ_187_2_3 | \n", "135 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "None | \n", "IGK | \n", "None | \n", "T | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "None | \n", "IGKV1-33,IGKV1D-33 | \n", "IGKJ4 | \n", "None | \n", "None | \n", "Orphan IGK | \n", "Orphan VJ | \n", "None | \n", "standard | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC | \n", "B_VDJ_220_3_2_VJ_4_2_1 | \n", "2196 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV1-69D,IGHV1-69 | \n", "IGHD3-22 | \n", "IGHJ3 | \n", "... | \n", "IGHD3-22 | \n", "IGHJ3 | \n", "IGKV1-8 | \n", "IGKJ1 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG | \n", "B_VDJ_85_1_1_VJ_194_1_1 | \n", "1750 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "IGH | \n", "IGL | \n", "T | \n", "T | \n", "IGHV1-2 | \n", "None | \n", "IGHJ3 | \n", "... | \n", "None | \n", "IGHJ3 | \n", "IGLV5-45 | \n", "IGLJ3 | \n", "IgM | \n", "IgM | \n", "IGH + IGL | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCTTGAGAC | \n", "B_VDJ_147_4_6_VJ_50_1_1 | \n", "1751 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV5-51 | \n", "None | \n", "IGHJ3 | \n", "... | \n", "None | \n", "IGHJ3 | \n", "IGKV1D-8 | \n", "IGKJ2 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACGGGAGCGACGTA | \n", "B_VDJ_145_2_1_VJ_56_2_1 | \n", "1752 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "IGH | \n", "IGL | \n", "T | \n", "T | \n", "IGHV4-4 | \n", "IGHD6-13 | \n", "IGHJ3 | \n", "... | \n", "IGHD6-13 | \n", "IGHJ3 | \n", "IGLV3-19 | \n", "IGLJ2,IGLJ3 | \n", "IgM | \n", "IgM | \n", "IGH + IGL | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| ... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
| vdj_v1_hs_pbmc3_b_TTTCCTCAGCGCTTAT | \n", "B_VDJ_66_5_4_VJ_183_1_1 | \n", "895 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV3-30 | \n", "IGHD4-17 | \n", "IGHJ6 | \n", "... | \n", "IGHD4-17 | \n", "IGHJ6 | \n", "IGKV2-30 | \n", "IGKJ2 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| vdj_v1_hs_pbmc3_b_TTTCCTCAGGGAAACA | \n", "B_VDJ_205_2_1_VJ_105_4_1 | \n", "896 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV4-61 | \n", "IGHD6-13 | \n", "IGHJ2 | \n", "... | \n", "IGHD6-13 | \n", "IGHJ2 | \n", "IGKV1-39,IGKV1D-39 | \n", "IGKJ1 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| vdj_v1_hs_pbmc3_b_TTTCCTCTCGACAGCC | \n", "B_VDJ_120_5_2_VJ_58_2_1 | \n", "897 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV1-46 | \n", "IGHD2-15 | \n", "IGHJ5 | \n", "... | \n", "IGHD2-15 | \n", "IGHJ5 | \n", "IGKV1-39,IGKV1D-39 | \n", "IGKJ2 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| vdj_v1_hs_pbmc3_b_TTTGCGCCATACCATG | \n", "B_VDJ_197_4_2_VJ_70_3_1 | \n", "898 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGL | \n", "T | \n", "T | \n", "IGHV1-69D,IGHV1-69 | \n", "IGHD2-15 | \n", "IGHJ6 | \n", "... | \n", "IGHD2-15 | \n", "IGHJ6 | \n", "IGLV1-47 | \n", "IGLJ3 | \n", "IgM | \n", "IgM | \n", "IGH + IGL | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| vdj_v1_hs_pbmc3_b_TTTGGTTGTAGGCATG | \n", "B_VDJ_206_6_7_VJ_87_3_1 | \n", "2598 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGL | \n", "T | \n", "T | \n", "IGHV3-23,IGHV3-23D | \n", "None | \n", "IGHJ4 | \n", "... | \n", "None | \n", "IGHJ4 | \n", "IGLV2-11 | \n", "IGLJ2,IGLJ3 | \n", "IgM | \n", "IgM | \n", "IGH + IGL | \n", "Single pair | \n", "standard | \n", "standard | \n", "
2493 rows × 47 columns
\n", "| \n", " | clone_id | \n", "clone_id_rank | \n", "sample_id | \n", "locus_VDJ | \n", "locus_VJ | \n", "productive_VDJ | \n", "productive_VJ | \n", "v_call_VDJ | \n", "d_call_VDJ | \n", "j_call_VDJ | \n", "... | \n", "d_call_B_VDJ_main | \n", "j_call_B_VDJ_main | \n", "v_call_B_VJ_main | \n", "j_call_B_VJ_main | \n", "isotype | \n", "isotype_status | \n", "locus_status | \n", "chain_status | \n", "rearrangement_status_VDJ | \n", "rearrangement_status_VJ | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG | \n", "B_VJ_187_2_3 | \n", "135 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "None | \n", "IGK | \n", "None | \n", "T | \n", "None | \n", "None | \n", "None | \n", "... | \n", "None | \n", "None | \n", "IGKV1-33,IGKV1D-33 | \n", "IGKJ4 | \n", "None | \n", "None | \n", "Orphan IGK | \n", "Orphan VJ | \n", "None | \n", "standard | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC | \n", "B_VDJ_220_3_2_VJ_4_2_1 | \n", "2196 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV1-69D,IGHV1-69 | \n", "IGHD3-22 | \n", "IGHJ3 | \n", "... | \n", "IGHD3-22 | \n", "IGHJ3 | \n", "IGKV1-8 | \n", "IGKJ1 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG | \n", "B_VDJ_85_1_1_VJ_194_1_1 | \n", "1750 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "IGH | \n", "IGL | \n", "T | \n", "T | \n", "IGHV1-2 | \n", "None | \n", "IGHJ3 | \n", "... | \n", "None | \n", "IGHJ3 | \n", "IGLV5-45 | \n", "IGLJ3 | \n", "IgM | \n", "IgM | \n", "IGH + IGL | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCTTGAGAC | \n", "B_VDJ_147_4_6_VJ_50_1_1 | \n", "1751 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV5-51 | \n", "None | \n", "IGHJ3 | \n", "... | \n", "None | \n", "IGHJ3 | \n", "IGKV1D-8 | \n", "IGKJ2 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACGGGAGCGACGTA | \n", "B_VDJ_145_2_1_VJ_56_2_1 | \n", "1752 | \n", "sc5p_v2_hs_PBMC_10k_b | \n", "IGH | \n", "IGL | \n", "T | \n", "T | \n", "IGHV4-4 | \n", "IGHD6-13 | \n", "IGHJ3 | \n", "... | \n", "IGHD6-13 | \n", "IGHJ3 | \n", "IGLV3-19 | \n", "IGLJ2,IGLJ3 | \n", "IgM | \n", "IgM | \n", "IGH + IGL | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| ... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
| vdj_v1_hs_pbmc3_b_TTTCCTCAGCGCTTAT | \n", "B_VDJ_66_5_4_VJ_183_1_1 | \n", "895 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV3-30 | \n", "IGHD4-17 | \n", "IGHJ6 | \n", "... | \n", "IGHD4-17 | \n", "IGHJ6 | \n", "IGKV2-30 | \n", "IGKJ2 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| vdj_v1_hs_pbmc3_b_TTTCCTCAGGGAAACA | \n", "B_VDJ_205_2_1_VJ_105_4_1 | \n", "896 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV4-61 | \n", "IGHD6-13 | \n", "IGHJ2 | \n", "... | \n", "IGHD6-13 | \n", "IGHJ2 | \n", "IGKV1-39,IGKV1D-39 | \n", "IGKJ1 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| vdj_v1_hs_pbmc3_b_TTTCCTCTCGACAGCC | \n", "B_VDJ_120_5_2_VJ_58_2_1 | \n", "897 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGK | \n", "T | \n", "T | \n", "IGHV1-46 | \n", "IGHD2-15 | \n", "IGHJ5 | \n", "... | \n", "IGHD2-15 | \n", "IGHJ5 | \n", "IGKV1-39,IGKV1D-39 | \n", "IGKJ2 | \n", "IgM | \n", "IgM | \n", "IGH + IGK | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| vdj_v1_hs_pbmc3_b_TTTGCGCCATACCATG | \n", "B_VDJ_197_4_2_VJ_70_3_1 | \n", "898 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGL | \n", "T | \n", "T | \n", "IGHV1-69D,IGHV1-69 | \n", "IGHD2-15 | \n", "IGHJ6 | \n", "... | \n", "IGHD2-15 | \n", "IGHJ6 | \n", "IGLV1-47 | \n", "IGLJ3 | \n", "IgM | \n", "IgM | \n", "IGH + IGL | \n", "Single pair | \n", "standard | \n", "standard | \n", "
| vdj_v1_hs_pbmc3_b_TTTGGTTGTAGGCATG | \n", "B_VDJ_206_6_7_VJ_87_3_1 | \n", "2598 | \n", "vdj_v1_hs_pbmc3_b | \n", "IGH | \n", "IGL | \n", "T | \n", "T | \n", "IGHV3-23,IGHV3-23D | \n", "None | \n", "IGHJ4 | \n", "... | \n", "None | \n", "IGHJ4 | \n", "IGLV2-11 | \n", "IGLJ2,IGLJ3 | \n", "IgM | \n", "IgM | \n", "IGH + IGL | \n", "Single pair | \n", "standard | \n", "standard | \n", "
2493 rows × 47 columns
\n", "| \n", " | sequence_id | \n", "cell_id | \n", "
|---|---|---|
| sequence_id | \n", "\n", " | \n", " |
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG_contig_1_0 | \n", "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG_contig_1_0 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG_contig_1_1 | \n", "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG_contig_1_1 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG_contig_1_2 | \n", "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG_contig_1_2 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC_contig_2_0 | \n", "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC_contig_2_0 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC | \n", "
| sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC_contig_2_1 | \n", "sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC_contig_2_1 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC | \n", "
| \n", " | sequence_id | \n", "sequence | \n", "rev_comp | \n", "productive | \n", "v_call | \n", "d_call | \n", "j_call | \n", "sequence_alignment | \n", "germline_alignment | \n", "junction | \n", "... | \n", "j_call_multimappers | \n", "j_call_multiplicity | \n", "j_call_sequence_start_multimappers | \n", "j_call_sequence_end_multimappers | \n", "j_call_support_multimappers | \n", "mu_count | \n", "ambiguous | \n", "extra | \n", "rearrangement_status | \n", "clone_id | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG_c... | \n", "TGGGGAGGAGTCAGTCCCAACCAGGACACGGCCTGGACATGAGGGT... | \n", "F | \n", "T | \n", "IGKV1-33 | \n", "NaN | \n", "IGKJ4 | \n", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTGG... | \n", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAG... | \n", "TGTCAACAATATGACGAACTTCCCGTCACTTTC | \n", "... | \n", "[\"IGKJ4*01\"] | \n", "1 | \n", "[385] | \n", "[412] | \n", "[3.56e-09] | \n", "27 | \n", "F | \n", "F | \n", "standard | \n", "B_VJ_187_2_3 | \n", "
| 1 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC_c... | \n", "ATCACATAACAACCACATTCCTCCTCTAAAGAAGCCCCTGGGAGCA... | \n", "F | \n", "T | \n", "IGHV1-69 | \n", "IGHD3-22 | \n", "IGHJ3 | \n", "CAGGTGCAGCTGGTGCAGTCTGGGGCT...GAGGTGAAGAAGCCTG... | \n", "CAGGTGCAGCTGGTGCAGTCTGGGGCT...GAGGTGAAGAAGCCTG... | \n", "TGTGCGACTACGTATTACTATGATAGTAGTGGTTATTACCAGAATG... | \n", "... | \n", "[\"IGHJ3*02\"] | \n", "1 | \n", "[445] | \n", "[494] | \n", "[4.5799999999999995e-23] | \n", "0 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_220_3_2_VJ_4_2_1 | \n", "
| 2 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC_c... | \n", "AGGAGTCAGACCCTGTCAGGACACAGCATAGACATGAGGGTCCCCG... | \n", "F | \n", "T | \n", "IGKV1-8 | \n", "NaN | \n", "IGKJ1 | \n", "GCCATCCGGATGACCCAGTCTCCATCCTCATTCTCTGCATCTACAG... | \n", "GCCATCCGGATGACCCAGTCTCCATCCTCATTCTCTGCATCTACAG... | \n", "TGTCAACAGTATTATAGTTACCCTCGGACGTTC | \n", "... | \n", "[\"IGKJ1*01\"] | \n", "1 | \n", "[380] | \n", "[415] | \n", "[2.7e-15] | \n", "0 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_220_3_2_VJ_4_2_1 | \n", "
| 3 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG_c... | \n", "ACTGTGGGGGTAAGAGGTTGTGTCCACCATGGCCTGGACTCCTCTC... | \n", "F | \n", "T | \n", "IGLV5-45 | \n", "NaN | \n", "IGLJ3 | \n", "CAGGCTGTGCTGACTCAGCCGTCTTCC...CTCTCTGCATCTCCTG... | \n", "CAGGCTGTGCTGACTCAGCCGTCTTCC...CTCTCTGCATCTCCTG... | \n", "TGTATGATTTGGCACAGCAGCGCTTGGGTGGTC | \n", "... | \n", "[\"IGLJ3*01\"] | \n", "1 | \n", "[402] | \n", "[431] | \n", "[6.84e-12] | \n", "8 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_85_1_1_VJ_194_1_1 | \n", "
| 4 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG_c... | \n", "GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTG... | \n", "F | \n", "T | \n", "IGHV1-2 | \n", "NaN | \n", "IGHJ3 | \n", "CAGGTGCAACTGGTGCAGTCTGGGGGT...GAGGTAAAGAAGCCTG... | \n", "CAGGTGCAGCTGGTGCAGTCTGGGGCT...GAGGTGAAGAAGCCTG... | \n", "TGTGCGAGAGAGATAGAGGGGGACGGTGTTTTTGAAATCTGG | \n", "... | \n", "[\"IGHJ3*02\"] | \n", "1 | \n", "[433] | \n", "[479] | \n", "[4.48e-18] | \n", "22 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_85_1_1_VJ_194_1_1 | \n", "
| ... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
| 7350 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTCCTCTCGACAGCC_contig_1 | \n", "ATCATCCAACAACCACATCCCTTCTCTACAGAAGCCTCTGAGAGGA... | \n", "F | \n", "T | \n", "IGHV1-46 | \n", "IGHD2-15 | \n", "IGHJ5 | \n", "CAGGTGCAGCTGGTGCAGTCTGGGGCT...GAGGTGAAGAAGCCTG... | \n", "CAGGTGCAGCTGGTGCAGTCTGGGGCT...GAGGTGAAGAAGCCTG... | \n", "TGTGCGAGAGAGGGATATTGTAGTGGTGGTAGCTGCTACTCCCCCG... | \n", "... | \n", "[\"IGHJ5*02\"] | \n", "1 | \n", "[461] | \n", "[506] | \n", "[7.83e-21] | \n", "0 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_120_5_2_VJ_58_2_1 | \n", "
| 7351 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGCGCCATACCATG_contig_2 | \n", "ATCACATAACAACCACATTCCTCCTCTAAAGAAGCCCCTGGGAGCA... | \n", "F | \n", "T | \n", "IGHV1-69 | \n", "IGHD2-15 | \n", "IGHJ6 | \n", "CAGGTGCAGCTGGTGCAGTCTGGGGCT...GAGGTGAAGAAGCCTG... | \n", "CAGGTGCAGCTGGTGCAGTCTGGGGCT...GAGGTGAAGAAGCCTG... | \n", "TGTGCGAGATCTCTGGATATTGTAGTGGTGGTAGCACTCTACTACT... | \n", "... | \n", "[\"IGHJ6*02\"] | \n", "1 | \n", "[439] | \n", "[497] | \n", "[4.57e-28] | \n", "0 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_197_4_2_VJ_70_3_1 | \n", "
| 7352 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGCGCCATACCATG_contig_1 | \n", "AGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGC... | \n", "F | \n", "T | \n", "IGLV1-47 | \n", "NaN | \n", "IGLJ3 | \n", "CAGTCTGTGCTGACTCAGCCACCCTCA...GCGTCTGGGACCCCCG... | \n", "CAGTCTGTGCTGACTCAGCCACCCTCA...GCGTCTGGGACCCCCG... | \n", "TGTGCAGCATGGGATGACAGCCTGAGTGGTTGGGTGTTC | \n", "... | \n", "[\"IGLJ3*02\"] | \n", "1 | \n", "[397] | \n", "[434] | \n", "[2.46e-16] | \n", "0 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_197_4_2_VJ_70_3_1 | \n", "
| 7353 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGGTTGTAGGCATG_contig_2 | \n", "GGCTGGGGTCTCAGGAGGCAGCACTCTCGGGACGTCTCCACCATGG... | \n", "F | \n", "T | \n", "IGLV2-11 | \n", "NaN | \n", "IGLJ2 | \n", "CAGTCTGCCCTGACTCAGCCTCGCTCA...GTGTCCGGGTCTCCTG... | \n", "CAGTCTGCCCTGACTCAGCCTCGCTCA...GTGTCCGGGTCTCCTG... | \n", "TGCTGCTCATATGCAGGCAGCTACACTGTGTTTTTC | \n", "... | \n", "[\"IGLJ3*01\"] | \n", "1 | \n", "[393] | \n", "[430] | \n", "[2.46e-11] | \n", "4 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_206_6_7_VJ_87_3_1 | \n", "
| 7354 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGGTTGTAGGCATG_contig_1 | \n", "AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCAT... | \n", "F | \n", "T | \n", "IGHV3-23 | \n", "NaN | \n", "IGHJ4 | \n", "GAGGTGCAGGTGTTGGAGTCTGGGGGA...GGCTTGGAACAGCCTG... | \n", "GAGGTGCAGCTGTTGGAGTCTGGGGGA...GGCTTGGTACAGCCTG... | \n", "TGTGCGGGGAGTCGGTGGTTATATTCTTTTGACTACTGG | \n", "... | \n", "[\"IGHJ4*02\"] | \n", "1 | \n", "[449] | \n", "[491] | \n", "[1.65e-17] | \n", "8 | \n", "F | \n", "F | \n", "standard | \n", "B_VDJ_206_6_7_VJ_87_3_1 | \n", "
7355 rows × 124 columns
\n", "| \n", " | barcode | \n", "contig_id | \n", "length | \n", "chain | \n", "v_gene | \n", "d_gene | \n", "j_gene | \n", "c_gene | \n", "full_length | \n", "productive | \n", "cdr3 | \n", "cdr3_nt | \n", "reads | \n", "umis | \n", "raw_clonotype_id | \n", "raw_consensus_id | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCATATCGG_c... | \n", "556 | \n", "IGK | \n", "IGKV1-33 | \n", "NaN | \n", "IGKJ4 | \n", "IGKC | \n", "NaN | \n", "True | \n", "CQQYDELPVTF | \n", "TGTCAACAATATGACGAACTTCCCGTCACTTTC | \n", "9139 | \n", "68 | \n", "B_VJ_187_2_3 | \n", "B_VJ_187_2_3 | \n", "
| 1 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC_c... | \n", "565 | \n", "IGH | \n", "IGHV1-69 | \n", "IGHD3-22 | \n", "IGHJ3 | \n", "IGHM | \n", "NaN | \n", "True | \n", "CATTYYYDSSGYYQNDAFDIW | \n", "TGTGCGACTACGTATTACTATGATAGTAGTGGTTATTACCAGAATG... | \n", "4161 | \n", "51 | \n", "B_VDJ_220_3_2_VJ_4_2_1 | \n", "B_VDJ_220_3_2_VJ_4_2_1 | \n", "
| 2 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCCGTTGTC_c... | \n", "551 | \n", "IGK | \n", "IGKV1-8 | \n", "NaN | \n", "IGKJ1 | \n", "IGKC | \n", "NaN | \n", "True | \n", "CQQYYSYPRTF | \n", "TGTCAACAGTATTATAGTTACCCTCGGACGTTC | \n", "5679 | \n", "43 | \n", "B_VDJ_220_3_2_VJ_4_2_1 | \n", "B_VDJ_220_3_2_VJ_4_2_1 | \n", "
| 3 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG_c... | \n", "642 | \n", "IGL | \n", "IGLV5-45 | \n", "NaN | \n", "IGLJ3 | \n", "IGLC3 | \n", "NaN | \n", "True | \n", "CMIWHSSAWVV | \n", "TGTATGATTTGGCACAGCAGCGCTTGGGTGGTC | \n", "13160 | \n", "90 | \n", "B_VDJ_85_1_1_VJ_194_1_1 | \n", "B_VDJ_85_1_1_VJ_194_1_1 | \n", "
| 4 | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG | \n", "test2_sc5p_v2_hs_PBMC_10k_b_AAACCTGTCGAGAACG_c... | \n", "550 | \n", "IGH | \n", "IGHV1-2 | \n", "NaN | \n", "IGHJ3 | \n", "IGHM | \n", "NaN | \n", "True | \n", "CAREIEGDGVFEIW | \n", "TGTGCGAGAGAGATAGAGGGGGACGGTGTTTTTGAAATCTGG | \n", "5080 | \n", "47 | \n", "B_VDJ_85_1_1_VJ_194_1_1 | \n", "B_VDJ_85_1_1_VJ_194_1_1 | \n", "
| ... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
| 7350 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTCCTCTCGACAGCC | \n", "test2_vdj_v1_hs_pbmc3_b_TTTCCTCTCGACAGCC_contig_1 | \n", "577 | \n", "IGH | \n", "IGHV1-46 | \n", "IGHD2-15 | \n", "IGHJ5 | \n", "IGHM | \n", "NaN | \n", "True | \n", "CAREGYCSGGSCYSPDPNNGWFDPW | \n", "TGTGCGAGAGAGGGATATTGTAGTGGTGGTAGCTGCTACTCCCCCG... | \n", "2960 | \n", "28 | \n", "B_VDJ_120_5_2_VJ_58_2_1 | \n", "B_VDJ_120_5_2_VJ_58_2_1 | \n", "
| 7351 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGCGCCATACCATG | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGCGCCATACCATG_contig_2 | \n", "568 | \n", "IGH | \n", "IGHV1-69 | \n", "IGHD2-15 | \n", "IGHJ6 | \n", "IGHM | \n", "NaN | \n", "True | \n", "CARSLDIVVVVALYYYYGMDVW | \n", "TGTGCGAGATCTCTGGATATTGTAGTGGTGGTAGCACTCTACTACT... | \n", "2464 | \n", "32 | \n", "B_VDJ_197_4_2_VJ_70_3_1 | \n", "B_VDJ_197_4_2_VJ_70_3_1 | \n", "
| 7352 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGCGCCATACCATG | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGCGCCATACCATG_contig_1 | \n", "645 | \n", "IGL | \n", "IGLV1-47 | \n", "NaN | \n", "IGLJ3 | \n", "IGLC3 | \n", "NaN | \n", "True | \n", "CAAWDDSLSGWVF | \n", "TGTGCAGCATGGGATGACAGCCTGAGTGGTTGGGTGTTC | \n", "2457 | \n", "28 | \n", "B_VDJ_197_4_2_VJ_70_3_1 | \n", "B_VDJ_197_4_2_VJ_70_3_1 | \n", "
| 7353 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGGTTGTAGGCATG | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGGTTGTAGGCATG_contig_2 | \n", "641 | \n", "IGL | \n", "IGLV2-11 | \n", "NaN | \n", "IGLJ2 | \n", "IGLC | \n", "NaN | \n", "True | \n", "CCSYAGSYTVFF | \n", "TGCTGCTCATATGCAGGCAGCTACACTGTGTTTTTC | \n", "2744 | \n", "36 | \n", "B_VDJ_206_6_7_VJ_87_3_1 | \n", "B_VDJ_206_6_7_VJ_87_3_1 | \n", "
| 7354 | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGGTTGTAGGCATG | \n", "test2_vdj_v1_hs_pbmc3_b_TTTGGTTGTAGGCATG_contig_1 | \n", "562 | \n", "IGH | \n", "IGHV3-23 | \n", "NaN | \n", "IGHJ4 | \n", "IGHM | \n", "NaN | \n", "True | \n", "CAGSRWLYSFDYW | \n", "TGTGCGGGGAGTCGGTGGTTATATTCTTTTGACTACTGG | \n", "1915 | \n", "22 | \n", "B_VDJ_206_6_7_VJ_87_3_1 | \n", "B_VDJ_206_6_7_VJ_87_3_1 | \n", "
7355 rows × 16 columns
\n", "